Infectious diseases · Decision tool

Multidrug-resistant organisms: what to treat with

Culture back with ESBL-E, AmpC-E, CRE, DTR P. aeruginosa, CRAB, S. maltophilia, MRSA or VRE? Pick the organism, its mechanism and the infection site for the preferred and alternative agents, what to avoid and why, combination rules, US label and availability, and the next step if it fails. Adults only.

IDSA 2026 AMR guidanceCRE by carbapenemaseMRSA · VREAllergy · pregnancyReviewed Oct 2026

1Organism on culture

AmpC-E here means the moderate-risk inducible-AmpC species: Enterobacter cloacae complex, Klebsiella aerogenes, Citrobacter freundii (and Hafnia alvei).

2Infection site

Cystitis = bladder only, afebrile. Complicated UTI includes pyelonephritis, febrile or bacteremic UTI, catheter-associated UTI and prostatitis (IDSA 2025 cUTI definitions, used by IDSA 2026 AMR).

3Patient

β-lactam allergy historyMild or remote reactions: see the penicillin-allergy topic; if unsure, pick the more restrictive answer

How it works

What this tool does and does not do

It is culture-directed: the organism and its resistance mechanism are known, and the agent must test susceptible. It does not choose empiric therapy, separate infection from colonization, or set durations beyond what the cited guidance states. Adults only.

No doses, except where the dose is part of the recommendation (high-dose ampicillin–sulbactam, 9 g/day of the sulbactam component, Q5.2; high-dose daptomycin, recs 19–20 and 72). Dose every agent from its label or your pharmacy and adjust for kidney function (kidney function tool). IDSA 2026 Table 1 gives adult doses for normal kidney and liver function; several differ from the label.

Order. IDSA 2026 lists preferred and alternative agents alphabetically. Where its rationale ranks them (KPC: meropenem–vaborbactam, then ceftazidime–avibactam, then imipenem–relebactam; DTR P. aeruginosa pneumonia: ceftolozane–tazobactam), the list follows that ranking and the headline names the top agent. Otherwise the headline says "Options (unranked)", and agents IDSA asks to reserve (cefiderocol for DTR P. aeruginosa, Q4.2) go last. With pregnancy ticked, an agent carrying a pregnancy label warning is never the headline.

Grades. IDSA 2026 AMR guidance does not use GRADE, so its lines carry no grade. MRSA lines carry the 2011 letter grades (A–C strength, I–III evidence) or the GRADE strength from the 2014 SSTI and 2016 HAP/VAP guidelines; SAB 2026 statements are "consensus".

Sites covered for each organism

Gram-negatives (IDSA 2026). Cystitis and complicated UTI have their own questions. For infections outside the urinary tract the guidance is not site-specific, so the same suggestion is shown for bloodstream, pneumonia, intra-abdominal, skin/soft tissue and bone/joint infection. CNS infection is not addressed (drug penetration differs) and goes to ID consult; see the IDSA 2017 healthcare-associated ventriculitis and meningitis guideline. CRAB and S. maltophilia sections address invasive infection only, so urinary sites are not covered.

MRSA. Skin/soft tissue, bloodstream, pneumonia, bone/joint and CNS (MRSA 2011, SSTI 2014, HAP/VAP 2016, SAB 2026). Urinary and intra-abdominal MRSA are not addressed.

VRE. No current IDSA or ESCMID VRE treatment guideline exists. Only catheter-related bacteremia is covered, from the IDSA 2009 catheter guideline (listed as archived on idsociety.org). Bacteremia from another source, endocarditis (see the AHA 2015 and ESC 2023 endocarditis guidance; not reviewed here), cystitis and every other site go to ID consult.

Allergy, pregnancy, label and availability rules

β-lactam allergy has three answers, applied to every line by one exclusion rule:

  • Unverified, non-anaphylactic penicillin allergy: penicillins (including sulbactam products) and penems are removed pending evaluation. Cephalosporins, carbapenems and aztreonam stay: the practice parameter suggests a cephalosporin may be given without testing in this situation (conditional, moderate certainty; secondary summary).
  • Immediate or anaphylactic reaction to a penicillin, or to a cephalosporin other than ceftazidime: penicillins (including sulbactam products), cephalosporins (including cefiderocol and ceftaroline) and penems are removed by default; the parameter suggests a dissimilar-R1-side-chain cephalosporin may be given after penicillin anaphylaxis (conditional), so an allergist-cleared cephalosporin is an option. Carbapenems (including meropenem–vaborbactam and imipenem–relebactam) and aztreonam (including aztreonam–avibactam) stay: the 2022 drug-allergy practice parameter suggests a carbapenem, and aztreonam unless there is ceftazidime allergy, may be given without testing (both conditional; read via a secondary summary).
  • Ceftazidime allergy: ceftazidime, ceftazidime–avibactam, aztreonam and aztreonam–avibactam are removed (shared side chain), and so is cefiderocol (side chain not verified safe). Other penicillins and cephalosporins are also removed pending allergy evaluation (conservative). Carbapenems stay.
  • Severe delayed reaction (SJS/TEN, DRESS): every β-lactam is removed, including carbapenems and aztreonam, and the result asks for an allergy consult.

The penicillin allergy topic covers risk stratification and cross-reactivity.

Pregnancy. None of the guidance used here gives pregnancy-specific agent choices. Label warnings are tagged on the agent wherever it appears: aminoglycosides (fetal harm), tetracycline class (tooth discoloration, last half of pregnancy), TMP-SMX (possible malformation association; IDSA 2014 SSTI: avoid in third trimester), nitrofurantoin (contraindicated at term), polymyxin B (safety not established), telavancin (boxed developmental warning), tedizolid (may cause fetal harm), gepotidacin (fetal weight and mortality findings in mice and rats, §8.1), colistimethate (talipes varus in rabbit fetuses), fluoroquinolones (IDSA 2014 SSTI: relative contraindication).

Off-label tags are shown for agents approved since 2014 whose labels name specific infections (the newer β-lactam combinations, cefiderocol, eravacycline, tigecycline, daptomycin, linezolid, telavancin, gepotidacin, pivmecillinam, sulopenem, IV fosfomycin). Older generics have broad organism-based labels; check them.

US availability (checked 21 Oct 2026). Cefepime–enmetazobactam (Exblifep) and plazomicin (Zemdri) are named by IDSA but listed as discontinued in Drugs@FDA, so they never appear as an option. Cefepime–taniborbactam is not FDA-approved. Cefmetazole is not available in the US (IDSA Q1.6). Sulbactam–durlobactam (2023), aztreonam–avibactam (Feb 2025), IV fosfomycin (Oct 2025), gepotidacin (Mar 2025), pivmecillinam (Apr 2024) and oral sulopenem (Oct 2024) are marketed.

Not covered: go to ID
  • Children and neonates.
  • Empiric therapy before the organism is known.
  • CNS infection by any gram-negative organism; VRE outside catheter-related bacteremia; MRSA urinary or intra-abdominal infection.
  • Endocarditis and prosthetic-device infection details (prosthetic valve, prosthetic joint, spinal hardware).
  • MSSA, VISA management beyond "use an alternative", and organisms not listed.
  • Exact durations and doses, including dose changes for kidney or liver impairment.

Sources

  1. Tamma PD, Bonomo RA, Heil EL, Justo JA, Satlin MJ, Mathers AJ. Infectious Diseases Society of America 2026 Guidance on the Treatment of Antimicrobial-Resistant Gram-Negative Infections. Published July 30, 2026; evidence current to March 1, 2026; replaces version 4.0 (2024). idsociety.org/practice-guideline/amr-guidance; Clin Infect Dis doi:10.1093/cid/ciag481. Questions 1.1–6.6 cited by number. Not GRADE-rated.
  2. Liu C, Bayer A, Cosgrove SE, et al. Clinical practice guidelines by the IDSA for the treatment of methicillin-resistant Staphylococcus aureus infections in adults and children. Clin Infect Dis 2011;52:e18–55 (executive summary Clin Infect Dis 2011;52:285–92, doi:10.1093/cid/cir034). Listed as ARCHIVED on idsociety.org (checked 2026-10-21); no replacement for antibiotic choice yet. Recommendations 1–73 cited by number with their letter grades.
  3. IDSA/ESCMID panel. IDSA/ESCMID 2026 consensus statements on Staphylococcus aureus bacteremia: risk stratification, diagnostic evaluation and management of adults and children, part 1 (consensus statements 1–7). Published September 9, 2026. idsociety.org/practice-guideline/staphylococcus-aureus-bacteremia. Antibiotic choice for MRSA is deferred to a later part.
  4. Kalil AC, Metersky ML, Klompas M, et al. Management of adults with hospital-acquired and ventilator-associated pneumonia: 2016 clinical practice guidelines by the IDSA and ATS. Clin Infect Dis 2016;63:e61–111. doi:10.1093/cid/ciw353 (MRSA HAP/VAP: vancomycin or linezolid, strong recommendation, moderate-quality evidence).
  5. Stevens DL, Bisno AL, Chambers HF, et al. Practice guidelines for the diagnosis and management of skin and soft tissue infections: 2014 update by the IDSA. Clin Infect Dis 2014;59:e10–52. doi:10.1093/cid/ciu444
  6. Mermel LA, Allon M, Bouza E, et al. Clinical practice guidelines for the diagnosis and management of intravascular catheter-related infection: 2009 update by the IDSA. Clin Infect Dis 2009;49:1–45 (PMC4039170). Listed as ARCHIVED on idsociety.org (checked 2026-10-21); the only IDSA text found with VRE agent recommendations. Enterococcal recommendations 89–97; gram-negative catheter removal recommendation 32.
  7. Khan DA, Banerji A, Blumenthal KG, et al. Drug allergy: a 2022 practice parameter update. J Allergy Clin Immunol 2022;150:1333–93 (PMID 36122788). Primary text not accessible this session; the carbapenem and aztreonam statements (both conditional) are taken from a secondary summary: University of Iowa Internal Medicine, Updates on Antibiotic Drug Allergy, 30 Nov 2023 (slides citing Khan 2022).
  8. IDSA 2026 AMR guidance Table 1 (suggested adult dosing): idsociety.org/globalassets/idsa/practice-guidelines/amr-guidance/5.0/table-1.pdf
  9. Rybak MJ, Le J, Lodise TP, et al. Therapeutic monitoring of vancomycin for serious MRSA infections: a revised consensus guideline (ASHP/IDSA/PIDS/SIDP). Am J Health Syst Pharm 2020;77:835–64. doi:10.1093/ajhp/zxaa036 (AUC-guided dosing replaces the 2011 trough targets).
  10. US prescribing information on DailyMed, versions current on 2026-10-21: Xacduro, Fetroja, Recarbrio, Vabomere, Emblaveo, Contepo, Blujepa, Pivya, Orlynvah, Xerava, tigecycline (Sandoz), Minocin IV, Zerbaxa, Avycaz, daptomycin (Baxter), linezolid (Sun), Vibativ, Zevtera, Teflaro, Dalvance, Orbactiv, Kimyrsa, Sivextro, colistimethate for injection (Xellia generic; Coly-Mycin M NDA 050108 is listed Discontinued in Drugs@FDA), polymyxin B (Xellia), tobramycin, gentamicin and amikacin injections, nitrofurantoin, sulfamethoxazole–trimethoprim, doxycycline. Indications, boxed warnings and pregnancy sections.
  11. US FDA, Drugs@FDA (openFDA drugsfda endpoint), queried 2026-10-21: Exblifep (cefepime–enmetazobactam, NDA 216165) and Zemdri (plazomicin, NDA 210303) listed as Discontinued; no application listed for cefepime–taniborbactam. No ESCMID or IDSA VRE treatment guideline listed on escmid.org or idsociety.org (checked 2026-10-21).

Educational reference only — not a substitute for clinical judgment, institutional protocols, or specialist advice. Calculations run in your browser; nothing you enter is sent or stored.